Reference

Technical reference documentation for Lacuna.

Documentation Sections

• Command-line interface

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  Complete CLI documentation with commands, options, and examples.

• Python API

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  Auto-generated API reference from source code docstrings.

Quick Links

Core Modules

• lacuna.core — Core data structures (SubjectData, MaskData)
• lacuna.analysis — Analysis modules (fLNM, sLNM, RegionalDamage)
• lacuna.spatial — Spatial operations and transformations

Assets

• lacuna.assets.connectomes — Connectome management and registration
• lacuna.assets.parcellations — Brain parcellation atlases

I/O & Processing

• lacuna.io — Dataset loading and export (BIDS-style naming)
• lacuna.batch — Parallel batch processing

About This Reference

This Python API reference documentation is auto-generated using mkdocstrings.