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How-to guides

Practical guides for specific tasks when working with Lacuna.

  • Spatial normalization

    How to register lesion masks to MNI space using ANTsPy.

  • Docker

    Run Lacuna analyses in a Docker container without local installation.

  • Apptainer

    Run Lacuna using Apptainer/Singularity containers without local installation.

  • HPC

    Set up SLURM job arrays to process large datasets on a cluster.

  • Custom atlases

    Use your own parcellation atlases with Regional Damage, SNM, or FNM.